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BioAnalyticResource / BAR_API Public

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Maize Update#321

Merged

asherpasha merged 44 commits into

masterBioAnalyticResource/BAR_API:masterfrom

devBioAnalyticResource/BAR_API:devCopy head branch name to clipboard

Jun 17, 2026

Conversation Commits44 (44)Checks Files changed

Merged

Maize Update#321
asherpasha merged 44 commits into
masterfrom
dev

Commits

Commits on Mar 23, 2026

Revert "Update master branch"

asherpasha
authored and
rmobmina
committed
edited microarray and added 2 new endpoints and created efp_proxy endpoints
rmobmina
committed
dynamic ORMs
rmobmina
committed
tried to fix to pass
rmobmina
committed
Add fail-fast: false to see all Python test results
rmobmina
committed
Add Sphinx/reST docstrings to dynamic ORM functions
rmobmina
committed
comment style
rmobmina
committed
Add Q&A reference guide for supervisor meetings
rmobmina
committed
Add guide explaining schema definition vs database creation
rmobmina
committed
Add BARUtils validation, Sphinx docstrings, and fix SQL injection
rmobmina
committed
got rid of inaccurate markdown files
rmobmina
committed
Fix flake8 linting errors
rmobmina
committed
flake8 ran
rmobmina
committed
Fix dynamic eFP query fallback for CI mirrors
rmobmina
committed
fixed syntax error
rmobmina
committed
Refactor EFP services and simplify schema definitions
rmobmina
committed
Fix missing length fields for string-type QA columns
rmobmina
committed
Add DB_HOST environment variable for Docker MySQL connection
rmobmina
committed
Handle external API errors gracefully in ATTED proxy
rmobmina
committed
Revert proxy changes - external API issue unrelated to EFP work
rmobmina
committed
fixed?
rmobmina
committed
fixed comments
rmobmina
committed
added new schemas
rmobmina
committed
should pass all checks?
rmobmina
committed
Fix TEXT columns in primary keys causing MySQL error
rmobmina
committed
checkcheck
rmobmina
committed
cleaned flake
rmobmina
committed
passed?
rmobmina
committed
updated schema
rmobmina
committed
fixed metadata
rmobmina
committed
set VARCHAR to 255
rmobmina
committed
removed POST from efp proxy and simplified endpoints to a single one
rmobmina
committed
add SQL Alchemy binds
rmobmina
committed
Deleted some unused files, renamed efp proxy to gene_expression
rmobmina
committed
fixed naming error
rmobmina
committed
restore bootstrap_simple_efp_dbs.py and efp_bootstrap.py needed for CI
rmobmina
committed
add gene ID detection and probeset conversion utilities for eFP expression endpoint
rmobmina
committed

Commits on Apr 3, 2026

Merge branch 'dev' into fix/refactor-efp-data-and-schemas
asherpasha
authored
Merge pull request #305 from rmobmina/fix/refactor-efp-data-and-schemas
asherpasha
authored
Linting...
asherpasha
committed
Merge pull request #312 from asherpasha/dev
asherpasha
authored

Commits on Jun 2, 2026

Added maize v5
asherpasha
committed
Dependancies updated.
asherpasha
committed
Merge pull request #320 from asherpasha/dev
asherpasha
authored

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