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Update ks4 to 4.1.7 and condas tos accept #92

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Merged
alejoe91 merged 1 commit into from
Jul 2, 2026
Merged

Update ks4 to 4.1.7 and condas tos accept #92

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4 changes: 3 additions & 1 deletion archived/yass/Dockerfile
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Expand Up @@ -37,7 +37,9 @@ RUN echo ". $CONDA_DIR/etc/profile.d/conda.sh" >> /root/.profile
RUN conda init bash

# install YASS
RUN conda install pytorch==1.2
RUN conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main && \
conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/r && \
conda install pytorch==1.2
RUN git clone https://github.com/paninski-lab/yass \
&& cd yass \
&& pip --no-cache-dir install -e . \
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6 changes: 4 additions & 2 deletions kilosort4/Dockerfile
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Expand Up @@ -2,7 +2,7 @@ FROM nvidia/cuda:12.0.0-base-ubuntu20.04

LABEL maintainer="Alessio Buccino <alessiop.buccino@gmail.com>"

ENV KILOSORT4_VERSION=4.0.38
ENV KILOSORT4_VERSION=4.1.7


# USER root
Expand All @@ -25,7 +25,9 @@ RUN wget --quiet https://repo.anaconda.com/miniconda/$LATEST_CONDA_SCRIPT -O ~/m
bash ~/miniconda.sh -b -p $CONDA_DIR && \
rm ~/miniconda.sh
ENV PATH=$CONDA_DIR/bin:$PATH
RUN conda update conda && \
RUN conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main && \
conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/r && \
conda update conda && \
conda install conda-build

# make conda activate command available from /bin/bash --login shells
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4 changes: 3 additions & 1 deletion pykilosort/Dockerfile
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Expand Up @@ -22,7 +22,9 @@ RUN wget --quiet https://repo.anaconda.com/miniconda/$LATEST_CONDA_SCRIPT -O ~/m
bash ~/miniconda.sh -b -p $CONDA_DIR && \
rm ~/miniconda.sh
ENV PATH=$CONDA_DIR/bin:$PATH
RUN conda update conda && \
RUN conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main && \
conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/r && \
conda update conda && \
conda install conda-build

# make conda activate command available from /bin/bash --login shells
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4 changes: 3 additions & 1 deletion spikeinterface-jupyterlab/Dockerfile
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Expand Up @@ -23,7 +23,9 @@ fix-permissions /srv/spikeinterface
USER $NB_UID

# update Anaconda and install pip
RUN conda update -y conda && \
RUN conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main && \
conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/r && \
conda update -y conda && \
conda install -y pip

# Conda installs
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